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1

Effect of the extraction and purification of soil DNA and pooling of PCR amplification products on the description of bacterial and archaeal communities

Sáenz, Johan S., Roldan, Fabio, Junca, Howard, Arbeli, Ziv

Journal:

Journal of Applied Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 928 KB

english, 2019

2

Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries

Howard Junca, Dietmar H. Pieper

Journal:

Environmental Microbiology

Année:

2004

Langue:

english

Fichier:

PDF, 483 KB

english, 2004

3

Enhancement of the microbial community biomass and diversity during air sparging bioremediation of a soil highly contaminated with kerosene and BTEX

Nadja Kabelitz, Jirina Machackova, Gwenaël Imfeld, Maria Brennerova, Dietmar H. Pieper, Hermann J. Heipieper, Howard Junca

Journal:

Applied Microbiology and Biotechnology

Année:

2009

Langue:

english

Fichier:

PDF, 646 KB

english, 2009

4

Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air-sparging bioremediation

Maria V. Brennerova, Jirina Josefiova, Vladimir Brenner, Dietmar H. Pieper, Howard Junca

Journal:

Environmental Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 246 KB

english, 2009

5

Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: Distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site

Barbara Hendrickx, Howard Junca, Jolana Vosahlova, Antje Lindner, Irene Rüegg, Margarete Bucheli-Witschel, Folkert Faber, Thomas Egli, Margit Mau, Michael Schlömann, Maria Brennerova, VLadimir Brenner

Journal:

Journal of Microbiological Methods

Année:

2006

Langue:

english

Fichier:

PDF, 252 KB

english, 2006

6

Amplified functional DNA restriction analysis to determine catechol 2,3-dioxygenase gene diversity in soil bacteria

Howard Junca, Dietmar H. Pieper

Journal:

Journal of Microbiological Methods

Année:

2003

Langue:

english

Fichier:

PDF, 513 KB

english, 2003

7

Effect of the extraction and purification of soil DNA and pooling of PCR amplification products on the description of bacterial and archaeal communities

Sáenz, Johan S., Roldan, Fabio, Junca, Howard, Arbeli, Ziv

Journal:

Journal of Applied Microbiology

Année:

2019

Fichier:

PDF, 928 KB

2019

8

Molecular detection and diversity of novel diterpenoid dioxygenase DitA1 genes from proteobacterial strains and soil samples

Robert Witzig, Hamdy A. H. Aly, Carsten Strömpl, Victor Wray, Howard Junca, Dietmar H. Pieper

Journal:

Environmental Microbiology

Année:

2007

Langue:

english

Fichier:

PDF, 460 KB

english, 2007

9

Establishment and characterization of a competitive exclusion bacterial culture derived from Nile tilapia (Oreochromis niloticus) gut microbiomes showing antibacterial activity against pathogenic Streptococcus agalactiae

Melo-Bolívar, Javier Fernando, Ruiz Pardo, Ruth Yolanda, Hume, Michael E., Nisbet, David J., Rodríguez-Villamizar, Fernando, Alzate, Juan F., Junca, Howard, Villamil Díaz, Luisa Marcela, Habimana, Oli

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 2.88 MB

english, 2019

10

In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

Laura C. Bohorquez, Luisa Delgado-Serrano, Gina López, César Osorio-Forero, Vanja Klepac-Ceraj, Roberto Kolter, Howard Junca, Sandra Baena, María Mercedes Zambrano

Journal:

Microbial Ecology

Année:

2012

Langue:

english

Fichier:

PDF, 479 KB

english, 2012

11

Erratum to: In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

Laura C. Bohorquez, Luisa Delgado-Serrano, Gina López, César Osorio-Forero, Vanja Klepac-Ceraj, Roberto Kolter, Howard Junca, Sandra Baena, María Mercedes Zambrano

Journal:

Microbial Ecology

Année:

2012

Langue:

english

Fichier:

PDF, 49 KB

english, 2012

12

Growth ofPseudomonas chloritidismutansAW-1Tonn-alkanes with chlorate as electron acceptor

Farrakh Mehboob, Howard Junca, Gosse Schraa, Alfons J. M. Stams

Journal:

Applied Microbiology and Biotechnology

Année:

2009

Langue:

english

Fichier:

PDF, 198 KB

english, 2009

13

Metabolic networks, microbial ecology and ‘omics’ technologies: towards understanding in situ biodegradation processes

Ramiro Vilchez-Vargas, Howard Junca, Dietmar H. Pieper

Journal:

Environmental Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2010

14

Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia

Newton C.M. Gomes, Cecilia G. Flocco, Rodrigo Costa, Howard Junca, Ramiro Vilchez, Dietmar H. Pieper, Ellen Krögerrecklenfort, Rodolfo Paranhos, Leda C.S. Mendonça-Hagler, Kornelia Smalla

Journal:

FEMS Microbiology Ecology

Année:

2010

Langue:

english

Fichier:

PDF, 435 KB

english, 2010

15

Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system

Ramiro Vilchez-Vargas, Robert Geffers, María Suárez-Diez, Ianina Conte, Agnes Waliczek, Vanessa Sabrina Kaser, Monika Kralova, Howard Junca, Dietmar H. Pieper

Journal:

Environmental Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2012

16

Evaluating a nested-PCR assay for detecting Streptococcus agalactiae in red tilapia (Oreochromis sp.) tissue

Angela Jiménez, Victor Tibatá, Howard Junca, Fernando Ariza, Noel Verjan, Carlos Iregui

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 308 KB

english, 2011

17

trans-Dienelactone hydrolase from Pseudomonas reinekei MT1, a novel zinc-dependent hydrolase

Beatriz Cámara, Macarena Marín, Michael Schlömann, Hans-Jürgen Hecht, Howard Junca, Dietmar H. Pieper

Journal:

Biochemical and Biophysical Research Communications

Année:

2008

Langue:

english

Fichier:

PDF, 655 KB

english, 2008

18

Identification and characterization of the α-l-arabinofuranosidase B of Fusarium oxysporum f. sp. dianthi

Carlos A. Chacón-Martínez, Juan M. Anzola, Andrés Rojas, Freddy Hernández, Howard Junca, Walter Ocampo, Patricia Del Portillo

Journal:

Physiological and Molecular Plant Pathology

Année:

2004

Langue:

english

Fichier:

PDF, 551 KB

english, 2004

19

Melanoidin-containing wastewaters induce selective laccase gene expression in the white-rot fungus Trametes sp. I-62

Tania González, María Carmen Terrón, Susana Yagüe, Howard Junca, José María Carbajo, Ernesto Javier Zapico, Ricardo Silva, Ainhoa Arana-Cuenca, Alejandro Téllez, Aldo Enrique González

Journal:

Research in Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 267 KB

english, 2008

20

Identification of a new laccase gene and confirmation of genomic predictions by cDNA sequences of Trametes sp. I-62 laccase family

Tania González, María del Carmen Terrón, Ernesto Zapico, Susana Yagüe, Alejandro Téllez, Howard Junca, Aldo González

Journal:

Mycological Research

Année:

2003

Langue:

english

Fichier:

PDF, 469 KB

english, 2003

21

Tannic acid induces transcription of laccase gene cglcc1 in the white-rot fungus Coriolopsis gallica

Carbajo, José M, Junca, Howard, Terrón, María C, González, Tania, Yagüe, Susana, Zapico, Ernesto, González, Aldo E

Journal:

Canadian Journal of Microbiology

Année:

2002

Fichier:

PDF, 159 KB

2002

22

Editorial overview: Environmental Biotechnology

Harms, Hauke, Junca, Howard

Journal:

Current Opinion in Biotechnology

Année:

2014

Langue:

english

Fichier:

PDF, 192 KB

english, 2014

23

Neotropical Andes hot springs harbor diverse and distinct planktonic microbial communities

Delgado-Serrano, Luisa, López, Gina, Bohorquez, Laura C., Bustos, José R., Rubiano, Carolina, Osorio-Forero, César, Junca, Howard, Baena, Sandra, Zambrano, María M.

Journal:

FEMS Microbiology Ecology

Année:

2014

Langue:

english

Fichier:

PDF, 385 KB

english, 2014

24

Eight Americas: A New Definition for “Americas”?

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 35 KB

english, 2007

25

[Springer Protocols Handbooks] || Introduction to Primer-Based Detection of Microbial Genes, Particularly Those Encoding Enzymes for Aromatic/Aliphatic Hydrocarbon Biodegradation

Année:

2016

Langue:

english

Fichier:

PDF, 74 KB

english, 2016

26

Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp ( Litopenaeus vannamei ), Isolated from a Colombian Caribbean Aquaculture Outbreak

Gálvez, Eric J. C., Carrillo-Castro, Katerine, Zárate, Lina, Güiza, Linda, Pieper, Dietmar H., García-Bonilla, Erika, Salazar, Marcela, Junca, Howard

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 162 KB

english, 2016

27

In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

Laura C. Bohorquez, Luisa Delgado-Serrano, Gina López, César Osorio-Forero, Vanja Klepac-Ceraj, Roberto Kolter, Howard Junca, Sandra Baena and María Mercedes Zambrano

Journal:

Microbial Ecology

Année:

2012

Langue:

english

Fichier:

PDF, 2.18 MB

english, 2012

28

Comparative Assessment of Mediterranean Gorgonian-Associated Microbial Communities Reveals Conserved Core and Locally Variant Bacteria

van de Water, Jeroen A. J. M., Melkonian, Rémy, Voolstra, Christian R., Junca, Howard, Beraud, Eric, Allemand, Denis, Ferrier-Pagès, Christine

Journal:

Microbial Ecology

Année:

2017

Langue:

english

Fichier:

PDF, 826 KB

english, 2017

29

Spirochaetes dominate the microbial community associated with the red coral Corallium rubrum on a broad geographic scale

van de Water, Jeroen A. J. M., Melkonian, Rémy, Junca, Howard, Voolstra, Christian R., Reynaud, Stéphanie, Allemand, Denis, Ferrier-Pagès, Christine

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 405 KB

english, 2016

30

Determination of the Africanized mitotypes in populations of honey bees ( Apis mellifera L.) of Colombia

Tibatá, Víctor Manuel, Arias, Edgar, Corona, Miguel, Ariza Botero, Fernando, Figueroa-Ramírez, Judith, Junca, Howard

Journal:

Journal of Apicultural Research

Année:

2017

Fichier:

PDF, 1.91 MB

2017

31

Molecular detection of Melissococcus plutonius assessed in Africanized honey bee populations ( Apis mellifera ) in three regions of Colombia

Tibatá, Víctor Manuel, Junca, Howard, Sánchez, Andrés, Corona, Miguel, Ariza Botero, Fernando, Figueroa, Judith

Journal:

Journal of Apicultural Research

Année:

2018

Fichier:

PDF, 1.46 MB

2018

32

Stable and Enriched Cenarchaeum symbiosum and Uncultured Betaproteobacteria HF1 in the Microbiome of the Mediterranean Sponge Haliclona fulva (Demospongiae: Haplosclerida)

García-Bonilla, Erika, Brandão, Pedro F. B., Pérez, Thierry, Junca, Howard

Journal:

Microbial Ecology

Année:

2018

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2018

33

Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes

Jiménez, Diego Javier, Andreote, Fernando Dini, Chaves, Diego, Montaña, José Salvador, Osorio-Forero, Cesar, Junca, Howard, Zambrano, María Mercedes, Baena, Sandra, Badger, Jonathan H.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2012

34

Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation

Vásquez-Piñeros, Mónica A., Martínez-Lavanchy, Paula M., Jehmlich, Nico, Pieper, Dietmar H., Rincón, Carlos A., Harms, Hauke, Junca, Howard, Heipieper, Hermann J.

Journal:

BMC Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 960 KB

english, 2018

35

Variations in Microbial Diversity and Metabolite Profiles of the Tropical Marine Sponge Xestospongia muta with Season and Depth

Villegas-Plazas, Marcela, Wos-Oxley, Melissa L, Sanchez, Juan A., Pieper, Dietmar H., Thomas, Olivier P., Junca, Howard

Journal:

Microbial Ecology

Année:

2018

Langue:

english

Fichier:

PDF, 1.65 MB

english, 2018

36

A composite taxonomical and functional framework of microbiomes under acid mine drainage bioremediation systems

Villegas-Plazas, Marcela, Sanabria, Janeth, Junca, Howard

Journal:

Journal of Environmental Management

Année:

2019

Langue:

english

Fichier:

PDF, 2.95 MB

english, 2019

37

A composite taxonomical and functional framework of microbiomes under acid mine drainage bioremediation systems

Villegas-Plazas, Marcela, Sanabria, Janeth, Junca, Howard

Journal:

Journal of Environmental Management

Année:

2019

Fichier:

PDF, 2.95 MB

2019

38

Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome

Vivero, Rafael J., Villegas-Plazas, Marcela, Cadavid-Restrepo, Gloria E., Herrera, Claudia Ximena Moreno, Uribe, Sandra I., Junca, Howard

Journal:

Scientific Reports

Année:

2019

Langue:

english

Fichier:

PDF, 3.50 MB

english, 2019

39

Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome

Vivero, Rafael J., Villegas-Plazas, Marcela, Cadavid-Restrepo, Gloria E., Herrera, Claudia Ximena Moreno, Uribe, Sandra I., Junca, Howard

Journal:

Scientific Reports

Année:

2019

Fichier:

PDF, 3.50 MB

2019

40

Design and validation of a transposon that promotes expression of genes in episomal DNA

Monguí, Alvaro, Lozano, Gabriel L., Handelsman, Jo, Restrepo, Silvia, Junca, Howard

Journal:

Journal of Biotechnology

Année:

2020

Fichier:

PDF, 2.19 MB

2020

41

Specialized microbiome of the cave-dwelling sponge Plakina kanaky (Porifera, Homoscleromorpha)

Ruiz, CÃ©sar, Villegas-Plazas, Marcela, Thomas, Olivier P, Junca, Howard, PÃ©rez, Thierry

Journal:

FEMS Microbiology Ecology

Année:

2020

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2020

42

Enrichment and characterization of a bilge microbial consortium with oil in water-emulsions breaking ability for oily wastewater treatment

Corti-MonzÃ³n, Georgina, Nisenbaum, Melina, Villegas-Plazas, Marcela, Junca, Howard, Murialdo, Silvia

Journal:

Année:

2020

Langue:

english

Fichier:

PDF, 8.00 MB

english, 2020

43

Enrichment and key features of a robust and consistent indigenous marine-cognate microbial consortium growing on oily bilge wastewaters

Nisenbaum, Melina, Corti-MonzÃ³n, Georgina, Villegas-Plazas, Marcela, Junca, Howard, Mangani, Adriana, Patat, MarÃa L., GonzÃ¡lez, Jorge F., Murialdo, Silvia E.

Journal:

Année:

2020

Fichier:

PDF, 918 KB

2020